Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08232.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (190 aa)    
Predicted Functional Partners:
EDS08234.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group.
       0.758
EDS08233.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.746
EDS08235.1
Hypothetical protein.
       0.746
EDS08231.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.584
EDS08236.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.499
EDS08228.1
Putative phage tail component domain protein; COG: NOG18823 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.481
EDS08226.1
Hypothetical protein; COG: NOG18825 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDS08227.1
Hypothetical protein; COG: NOG18824 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDS08229.1
Phage tail tape measure protein, TP901 family; KEGG: mmu:19360 0.0048 Rad50; RAD50 homolog (S. cerevisiae); COG: COG5280 Phage-related minor tail protein.
       0.478
EDS08230.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.476
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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