Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08239.1Phage portal protein, HK97 family; COG: COG4695 Phage-related protein. (448 aa)    
Predicted Functional Partners:
EDS08240.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.906
EDS08242.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.896
clpP-2
KEGG: lsl:LSL_0785 5.6e-35 clpP; ATP-dependent Clp protease proteolytic subunit K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 9.65; Belongs to the peptidase S14 family.
  
    0.819
EDS08237.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.796
EDS08236.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.697
EDS08655.1
Phage DNA packaging protein; COG: NOG22900 non supervised orthologous group.
  
 
 0.643
EDS08241.1
Putative phage terminase, small subunit, P27 family.
       0.597
EDS07389.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.535
EDS08234.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group.
       0.508
DpnM_1
D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 1.2e-23 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.469
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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