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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08241.1Putative phage terminase, small subunit, P27 family. (129 aa)    
Predicted Functional Partners:
EDS08240.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
       0.782
EDS08237.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.602
clpP-2
KEGG: lsl:LSL_0785 5.6e-35 clpP; ATP-dependent Clp protease proteolytic subunit K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 9.65; Belongs to the peptidase S14 family.
       0.590
EDS08239.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein.
       0.590
EDS08242.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.538
EDS08236.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.521
EDS08243.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.405
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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