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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08243.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (120 aa)    
Predicted Functional Partners:
EDS08244.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.689
EDS08245.1
VRR-NUC domain protein; Psort location: Cytoplasmic, score: 8.87.
       0.689
EDS08246.1
Hypothetical protein; KEGG: pab:PAB0592 0.0069 DNA helicase related protein K03726.
       0.627
EDS08242.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.623
EDS08247.1
Hypothetical protein; COG: NOG14934 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.610
EDS08248.1
Hypothetical protein; KEGG: rbe:RBE_0246 0.0047 mannose-1-phosphate guanylyltransferase K00971.
       0.412
EDS08249.1
Hypothetical protein; KEGG: hma:rrnAC1820 0.0046 phosphoserine phosphatase K01079; Psort location: Cytoplasmic, score: 8.87.
       0.412
EDS08240.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
       0.405
EDS08241.1
Putative phage terminase, small subunit, P27 family.
       0.405
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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