STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcmDNA (cytosine-5-)-methyltransferase; KEGG: san:gbs1370 1.3e-37 similar to methyl transferase K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (418 aa)    
Predicted Functional Partners:
EDS08261.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.768
EDS08262.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.768
dcm-2
KEGG: cac:CAC1222 4.8e-100 DNA-methyltransferase (cytosine-specific) K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
 
     0.761
Dam
D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 8.9e-21 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
     
 0.579
EDS08263.1
Hypothetical protein.
       0.572
vsr
DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
 
   
 0.565
EDS08256.1
DNA N-6-adenine-methyltransferase (Dam); KEGG: sac:SACOL0346 1.1e-40 prophage L54a, N-6-adenine-methyltransferase K00571; COG: NOG18143 non supervised orthologous group.
     
 0.491
EDS08259.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.484
EDS08253.1
Hypothetical protein.
       0.475
EDS08254.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.475
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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