Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08272.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
EDS08273.1
Hypothetical protein; COG: NOG17973 non supervised orthologous group.
 
     0.815
EDS08274.1
KEGG: bha:BH1417 3.6e-24 5-formyltetrahydrofolate cyclo-ligase K01934; COG: COG0212 5-formyltetrahydrofolate cyclo-ligase; Psort location: Cytoplasmic, score: 8.87.
       0.790
EDS08275.1
COG: COG4224 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.790
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.736
EDS08742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.731
EDS06302.1
Hypothetical protein.
  
     0.707
EDS07655.1
Hypothetical protein; KEGG: tte:TTE2564 2.6e-11 surA2; parvulin-like peptidyl-prolyl isomerase K07533; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
  
 0.691
EDS06639.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.662
EDS07942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.650
EDS06859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.643
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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