Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YkfALD-carboxypeptidase; KEGG: bcl:ABC0781 1.1e-45 muramoyltetrapeptide carboxypeptidase K01297; COG: COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; Psort location: Cytoplasmic, score: 8.87. (332 aa)    
Predicted Functional Partners:
EDS08283.1
Endonuclease/exonuclease/phosphatase family protein; COG: NOG13853 non supervised orthologous group.
       0.762
EDS08285.1
SCP-like protein; COG: COG2340 Uncharacterized protein with SCP/PR1 domains.
 
     0.598
EDS08282.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.450
yeaZ
Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 6.5e-41 O-sialoglycoprotein endopeptidase K01409; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; Psort location: Cytoplasmic, score: 8.87.
 
    0.408
rlmH
rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.402
EDS08164.1
Radical SAM domain protein; KEGG: ctc:CTC02064 5.7e-177 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
 
     0.401
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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