Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08307.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (58 aa)    
Predicted Functional Partners:
bphD
Hydrolase, alpha/beta domain protein; KEGG: rle:RL1292 5.0e-27 putative arylesterase K01045; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Psort location: Cytoplasmic, score: 9.36.
       0.773
EDS08305.1
Flavin reductase; KEGG: ppu:PP_0236 0.00064 ssuE; NADH-dependent FMN reductase K00299; COG: COG0655 Multimeric flavodoxin WrbA.
       0.773
EDS08306.1
Hypothetical protein.
       0.572
EDS07942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.532
EDS04863.1
IMP cyclohydrolase-like protein; KEGG: mka:MK0087 4.1e-08 IMP cyclohydrolase K01492; COG: COG3363 Archaeal IMP cyclohydrolase; Psort location: Cytoplasmic, score: 8.87.
  
     0.530
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.525
EDS06639.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.519
EDS08308.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.0013 dam; adenine-specific DNA methyltransferase K06223; COG: COG1476 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.507
EDS05418.1
Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
     0.487
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.469
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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