Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS08312.1Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (439 aa)    
Predicted Functional Partners:
bmr3_3
Transporter, major facilitator family protein; KEGG: tdn:Tmden_0898 0.0010 protein-disulfide reductase K04084; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.829
RibZ
Transporter, major facilitator family protein; KEGG: dar:Daro_1499 0.00058 NAD(P) transhydrogenase, beta subunit K00325; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.752
bmr3_2
COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.750
EDS08803.1
Hypothetical protein; KEGG: bme:BMEI1837 0.00077 cellobiose-phosphorylase K00702; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cytoplasmic, score: 8.87.
  
     0.706
appA_2
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 8.1e-10 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Extracellular, score: 8.61.
  
     0.580
EDS08313.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.570
EDS08772.1
Hypothetical protein; COG: NOG20173 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.559
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
  
     0.548
yxeP
Amidohydrolase; KEGG: hso:HS_1434 2.1e-67 amaA; possible N-acyl-L-amino acid amidohydrolase K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87.
 
     0.446
EDS08314.1
Hypothetical protein.
       0.428
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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