Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (159 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.820
EDS08373.1
Hypothetical protein; KEGG: fnu:FN1387 7.4e-33 metal dependent hydrolase; COG: COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; Psort location: Cytoplasmic, score: 8.87.
       0.787
mog_2
KEGG: hpa:HPAG1_0784 3.1e-18 molybdopterin biosynthesis protein; COG: COG0521 Molybdopterin biosynthesis enzymes; Psort location: Cytoplasmic, score: 8.87.
       0.780
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
      0.699
tcrA
KEGG: rha:RHA1_ro05622 2.9e-31 response regulator (protein-glutamate methylesterase) K07669; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.55.
      
 0.618
yohK
Putative TIGR00659 family protein; KEGG: bcz:BCZK3376 1.4e-29 murein hydrolase export regulator K01238; COG: COG1346 Putative effector of murein hydrolase; Psort location: CytoplasmicMembrane, score: 9.99.
       0.615
LrgA
LrgA family protein; KEGG: bcz:BCZK5136 4.0e-09 membrane protein; possible murein hydrolase exporter K05338; COG: COG1380 Putative effector of murein hydrolase LrgA; Psort location: CytoplasmicMembrane, score: 9.26.
       0.615
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.596
ssb_2
KEGG: shn:Shewana3_3590 1.7e-16 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.589
ssb_1
KEGG: shn:Shewana3_3590 3.8e-13 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.589
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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