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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytH_1KEGG: hne:HNE_0633 2.9e-09 peptidase, M23 family; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 8.10. (374 aa)    
Predicted Functional Partners:
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.631
YaaH
LysM domain protein; KEGG: ctc:CTC01180 6.0e-70 spore peptidoglycan hydrolase (N-acetylglucosaminidase) K06306; COG: COG3858 Predicted glycosyl hydrolase.
 
     0.593
EDS05129.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.572
EDS06660.1
Hypothetical protein; COG: NOG13729 non supervised orthologous group.
  
    0.510
EDS04948.1
FeoA domain protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.433
EDS05453.1
Hypothetical protein; COG: NOG30793 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.431
EDS06295.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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