Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08439.1Hypothetical protein; COG: NOG11422 non supervised orthologous group. (90 aa)    
Predicted Functional Partners:
pap
polyphosphate:AMP phosphotransferase; KEGG: gbe:GbCGDNIH1_1622 4.5e-42 polyphosphate kinase K00937; COG: COG2326 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.778
EDS08438.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.774
EDS08441.1
Hypothetical protein.
       0.523
dgt_2
Putative dGTPase; KEGG: tte:TTE1757 2.1e-108 dgt; dGTP triphosphohydrolase K01129; COG: COG0232 dGTP triphosphohydrolase; Psort location: Cytoplasmic, score: 8.87; Belongs to the dGTPase family. Type 2 subfamily.
       0.486
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.451
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tma:TM1359 1.6e-21 sensor histidine kinase K02486; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.423
EDS08283.1
Endonuclease/exonuclease/phosphatase family protein; COG: NOG13853 non supervised orthologous group.
  
     0.413
EDS05268.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.412
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.405
EDS08442.1
Hypothetical protein.
       0.400
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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