Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08484.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (411 aa)    
Predicted Functional Partners:
YxlF_7
KEGG: noc:Noc_2142 8.6e-39 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.951
EDS06823.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.794
yxlF_1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A3130 1.3e-42 ABC transporter component K06020; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.614
yxlF_2
KEGG: noc:Noc_2142 1.1e-40 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.600
EDS06180.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.530
rbn_1
Hypothetical protein; KEGG: hma:rrnAC2500 1.4e-09 metallo-beta-lactamase-like K00784; COG: COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; Psort location: Cytoplasmic, score: 8.87.
 
     0.526
EDS07003.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.518
EDS05115.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.502
sleB_2
Cell Wall Hydrolase; KEGG: chy:CHY_1756 1.5e-16 putative spore cortex-lytic enzyme K01449; COG: COG1388 FOG: LysM repeat.
       0.481
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
 
     0.448
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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