Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XylB_7KEGG: tma:TM0284 3.5e-42 sugar kinase, FGGY family K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (231 aa)    
Predicted Functional Partners:
XylB_6
Carbohydrate kinase, FGGY family protein; KEGG: mta:Moth_2025 1.1e-36 xylulokinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases.
 
     0.970
fucA_2
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: chy:CHY_1555 3.9e-43 fucA2; L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.812
pdxB-2
KEGG: hwa:HQ2066A 3.5e-58 serA; phosphoglycerate dehydrogenase K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.65; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.784
xylB_8
Carbohydrate kinase, FGGY family protein; KEGG: cac:CAC2612 1.8e-63 xylB; xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
 
    
0.766
lyx_2
Carbohydrate kinase, FGGY family protein; KEGG: gka:GK1941 2.2e-56 gluconokinase K00851; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
  
     0.766
pdxB-3
KEGG: hwa:HQ2066A 2.6e-60 serA; phosphoglycerate dehydrogenase K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.98; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.693
DeoR_1
Putative sugar-binding domain protein; KEGG: rde:RD1_3614 2.8e-33 glycerone kinase, putative K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.542
dhaL
Dihydroxyacetone kinase, L subunit; KEGG: sme:SMb20313 1.2e-55 putative dihydroxyacetone kinase protein K05879; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
  
    0.406
dhaK
DAK1 domain protein; KEGG: ypm:YP_0337 4.8e-116 dAK1_1; putative dihydroxyacetone kinase K05878; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
  
    0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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