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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DeoR_1Putative sugar-binding domain protein; KEGG: rde:RD1_3614 2.8e-33 glycerone kinase, putative K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87. (316 aa)    
Predicted Functional Partners:
dhaK
DAK1 domain protein; KEGG: ypm:YP_0337 4.8e-116 dAK1_1; putative dihydroxyacetone kinase K05878; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
     0.785
xylB_8
Carbohydrate kinase, FGGY family protein; KEGG: cac:CAC2612 1.8e-63 xylB; xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
 
  
 0.706
pdxB-3
KEGG: hwa:HQ2066A 2.6e-60 serA; phosphoglycerate dehydrogenase K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.98; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.692
dhaL
Dihydroxyacetone kinase, L subunit; KEGG: sme:SMb20313 1.2e-55 putative dihydroxyacetone kinase protein K05879; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
     0.643
pdxB-2
KEGG: hwa:HQ2066A 3.5e-58 serA; phosphoglycerate dehydrogenase K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.65; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.616
fucA_2
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: chy:CHY_1555 3.9e-43 fucA2; L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
  
    0.551
XylB_7
KEGG: tma:TM0284 3.5e-42 sugar kinase, FGGY family K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.548
YurK_2
UbiC transcription regulator-associated domain protein; KEGG: mtc:MT0817 2.6e-14 dihydrolipoamide dehydrogenase K00382; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.498
lsrF
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; KEGG: mja:MJ0400 5.5e-44 putative aldolase K01726; COG: COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.496
EltP
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.487
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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