Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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eltD_1Putative chlorophyll synthesis pathway protein BchC; KEGG: psp:PSPPH_2725 8.0e-107 sorbitol dehydrogenase, putative K00100; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98. (363 aa)    
Predicted Functional Partners:
dhaK
DAK1 domain protein; KEGG: ypm:YP_0337 4.8e-116 dAK1_1; putative dihydroxyacetone kinase K05878; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
   0.721
dhaL
Dihydroxyacetone kinase, L subunit; KEGG: sme:SMb20313 1.2e-55 putative dihydroxyacetone kinase protein K05879; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
   0.711
SugB_1
KEGG: cyb:CYB_0398 1.0e-05 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.691
ugpC
KEGG: rpa:RPA3471 2.1e-74 ABC transporter, ATP-binding protein K02023; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
       0.648
sugC_1
ABC transporter, ATP-binding protein; KEGG: lpn:lpg1729 1.5e-64 ugpC; sn-glycerol-3-phosphate transport, ATP binding protein K05816; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49; Belongs to the ABC transporter superfamily.
       0.648
UgpA_3
KEGG: cya:CYA_1846 0.00032 modB; molybdate ABC transporter, permease protein K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.595
EltP
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.527
DeoR_1
Putative sugar-binding domain protein; KEGG: rde:RD1_3614 2.8e-33 glycerone kinase, putative K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.478
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.442
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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