Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sugC_1ABC transporter, ATP-binding protein; KEGG: lpn:lpg1729 1.5e-64 ugpC; sn-glycerol-3-phosphate transport, ATP binding protein K05816; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49; Belongs to the ABC transporter superfamily. (384 aa)    
Predicted Functional Partners:
SugB_1
KEGG: cyb:CYB_0398 1.0e-05 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.962
UgpA_3
KEGG: cya:CYA_1846 0.00032 modB; molybdate ABC transporter, permease protein K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.936
sugB_2
KEGG: ava:Ava_0243 3.5e-05 molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.914
araP_1
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.914
ugpC
KEGG: rpa:RPA3471 2.1e-74 ABC transporter, ATP-binding protein K02023; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 
0.907
EDS06813.1
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 2.1e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
  
 0.889
EDS05820.1
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
 0.889
ycjO_2
KEGG: ava:Ava_0243 7.8e-05 molybdate ABC transporter, permease protein K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.823
ycjP_2
KEGG: cya:CYA_1846 1.7e-06 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.818
ugpA_2
ABC transporter, permease protein; KEGG: hpa:HPAG1_0451 1.9e-07 molybdenum ABC transporter ModB K06022; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.818
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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