Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
rhaBRhamnulokinase; KEGG: oih:OB0495 6.0e-118 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (465 aa)    
Predicted Functional Partners:
lyx_3
Carbohydrate kinase, FGGY family protein; KEGG: sme:SMb20497 9.5e-88 lyx; putative L-xylulose kinase protein K00880; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
 
  
  0.929
lyx_1
Carbohydrate kinase, FGGY family protein; KEGG: yps:YPTB0797 3.4e-92 sgbK, lyx, lyxK, xylK; putative L-xylulose kinase K00880; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
  
  
 
0.904
rhaB-2
Rhamnulokinase; KEGG: bha:BH1551 5.4e-133 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
  
  
 
0.903
fucA_3
Class II Aldolase and Adducin domain protein; KEGG: cpf:CPF_1051 3.5e-58 fucA; L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.839
araB
Carbohydrate kinase, FGGY family protein; KEGG: lsa:LSA1859 2.2e-159 araB; L-ribulokinase K00853; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.741
fucI
Arabinose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
  
 0.698
AraD
KEGG: bld:BLi02063 3.6e-79 putative L-ribulose-5-phosphate 4-epimerase; RBL00998 K03077; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
  
 0.655
EDS06363.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.467
fucU
RbsD/FucU transport family protein; COG: COG4154 Fucose dissimilation pathway protein FucU; Psort location: Cytoplasmic, score: 8.87; Belongs to the RbsD / FucU family.
 
    0.449
EDS07804.1
Hypothetical protein.
       0.420
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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