Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
iolGOxidoreductase, NAD-binding domain protein; KEGG: sus:Acid_1485 1.2e-27 inositol 2-dehydrogenase K00010; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87. (343 aa)    
Predicted Functional Partners:
EDS07825.1
Amidohydrolase family protein; COG: NOG27356 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.784
malX
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 0.00013 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.780
ycjP_2
KEGG: cya:CYA_1846 1.7e-06 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.740
ycjO_1
KEGG: pac:PPA0505 4.8e-05 ABC transporter, putative molybdenum transport system K02017:K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.699
EDS07222.1
Oxidoreductase, NAD-binding domain protein; KEGG: bha:BH2220 9.0e-16 dehydrogenase K00010; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.634
YteT_2
Oxidoreductase, NAD-binding domain protein; KEGG: mba:Mbar_A1138 1.2e-11 myo-inositol 2-dehydrogenase K00010; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.618
lysS
lysine--tRNA ligase; KEGG: tte:TTE2372 6.7e-158 lysU; lysyl-tRNA synthetase class II K04567; COG: COG1190 Lysyl-tRNA synthetase (class II); Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.581
EDS07824.1
FeoA domain protein; COG: COG1918 Fe2+ transport system protein A; Psort location: Cytoplasmic, score: 8.87.
       0.464
feoA
FeoA domain protein; COG: COG1918 Fe2+ transport system protein A; Psort location: Cytoplasmic, score: 8.87.
       0.448
EDS07006.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 5.7e-08 beta-N-acetylhexosaminidase K01207; COG: NOG36584 non supervised orthologous group.
 
  
 0.436
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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