Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
EDS07830.1Transcriptional regulator, AraC family; KEGG: bcz:BCZK0490 1.1e-13 response regulator K02475; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98. (248 aa)    
Predicted Functional Partners:
yehU_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bld:BLi00440 1.4e-40 putative ABC transporter (permease); RBL00398 K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.958
ypdA_1
HAMP domain protein; KEGG: bld:BLi01366 3.7e-70 yesM; similar to two-component sensor histidine kinase [YesN]; RBL02409 K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
 
 0.826
yehU_2
HAMP domain protein; KEGG: bha:BH3447 4.8e-61 two-component sensor histidine kinase K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
 
 0.809
ypdA_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tte:TTE2344 7.8e-45 lytS2; predicted ATPase K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.807
ypdA_2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tte:TTE2344 2.0e-46 lytS2; predicted ATPase K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.804
ypdA_4
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bld:BLi01366 5.0e-43 yesM; similar to two-component sensor histidine kinase [YesN]; RBL02409 K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.796
Btr_2
KEGG: bcz:BCZK3497 1.4e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.439
malX
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 0.00013 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
       0.438
cckA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ret:RHE_CH02326 3.0e-25 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 
 0.437
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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