Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rbsC_4Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-51 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (350 aa)    
Predicted Functional Partners:
rbsA_2
KEGG: mlo:mll7012 3.0e-123 ribose ABC transporter, ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 0.993
rbsB_1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 0.983
rbsD
RbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.970
mglA_1
ABC transporter, ATP-binding protein; KEGG: bha:BH2322 1.8e-125 putative simple sugar transport system ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.876
MglA_3
ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.7e-161 mglA; galactoside transport ATP-binding protein mglA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.871
rbsA_3
KEGG: atc:AGR_L_85 8.1e-114 ABC transporter ATP binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.868
MglA_2
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.9e-121 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.868
alsB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.863
thpA
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.861
rbsB_3
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.858
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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