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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07845.1Hypothetical protein; KEGG: rha:RHA1_ro04091 1.1e-06 L-arabinose isomerase K01804; COG: COG2407 L-fucose isomerase and related proteins; Psort location: Cytoplasmic, score: 8.87. (466 aa)    
Predicted Functional Partners:
dxs_1
Transketolase, C-terminal domain protein; KEGG: lmo:lmo1033 1.8e-86 similar to transketolase K00615; COG: COG3958 Transketolase, C-terminal subunit.
 
    0.946
Tkt_1
Transketolase, thiamine diphosphate binding domain protein; KEGG: lmf:LMOf2365_1053 7.1e-83 transketolase, N-terminal subunit K00615; COG: COG3959 Transketolase, N-terminal subunit; Psort location: Cytoplasmic, score: 8.87.
 
    0.910
cytR
Sugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.866
EDS07841.1
Hypothetical protein; COG: COG5618 Predicted periplasmic lipoprotein.
 
     0.712
rbsB_1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.693
rbsR
Sugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.634
rbsD
RbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
   
 0.510
EDS06363.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.478
rbsC_4
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-51 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.441
araB
Carbohydrate kinase, FGGY family protein; KEGG: lsa:LSA1859 2.2e-159 araB; L-ribulokinase K00853; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.426
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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