Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07845.1Hypothetical protein; KEGG: rha:RHA1_ro04091 1.1e-06 L-arabinose isomerase K01804; COG: COG2407 L-fucose isomerase and related proteins; Psort location: Cytoplasmic, score: 8.87. (466 aa)    
Predicted Functional Partners:
dxs_1
Transketolase, C-terminal domain protein; KEGG: lmo:lmo1033 1.8e-86 similar to transketolase K00615; COG: COG3958 Transketolase, C-terminal subunit.
 
     0.943
Tkt_1
Transketolase, thiamine diphosphate binding domain protein; KEGG: lmf:LMOf2365_1053 7.1e-83 transketolase, N-terminal subunit K00615; COG: COG3959 Transketolase, N-terminal subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.908
cytR
Sugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.865
EDS07841.1
Hypothetical protein; COG: COG5618 Predicted periplasmic lipoprotein.
 
     0.713
rbsB_1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.692
rbsR
Sugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.633
rbsD
RbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
     0.494
rbsC_4
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-51 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.441
EDS06363.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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