Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07862.1Hypothetical protein; KEGG: chu:CHU_1335 0.00057 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein K01238. (451 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I; KEGG: spk:MGAS9429_Spy0112 4.5e-26 signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
     
 0.746
EDS07861.1
Hypothetical protein.
       0.746
EDS07863.1
Hypothetical protein.
       0.645
EDS07859.1
Pilin isopeptide linkage domain protein; KEGG: cal:orf19.4072 0.0015 HYR10; similar to cell surface flocculin K01186.
      
0.532
srtB
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
       0.431
spoIIIE
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.5e-122 DNA segregation ATPase FtsK/SpoIIIE related protein; COG: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Psort location: CytoplasmicMembrane, score: 7.63.
    
 
 0.429
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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