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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ImmR_3DNA-binding helix-turn-helix protein; COG: NOG20170 non supervised orthologous group. (94 aa)    
Predicted Functional Partners:
EDS05024.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.729
EDS04849.1
DNA-binding helix-turn-helix protein; COG: NOG26022 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.716
EDS05494.1
Transcriptional regulator, AbrB family; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.705
immR_8
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.619
EDS07867.1
Hypothetical protein.
       0.524
DdpX
Acetyltransferase, GNAT family; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
  
    0.519
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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