Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YurK_2UbiC transcription regulator-associated domain protein; KEGG: mtc:MT0817 2.6e-14 dihydrolipoamide dehydrogenase K00382; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (257 aa)    
Predicted Functional Partners:
rbsK_2
Kinase, PfkB family; KEGG: cdi:DIP0655 9.2e-19 putative ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98; Belongs to the carbohydrate kinase PfkB family.
 
   
 0.651
draG_2
ADP-ribosylglycohydrolase; KEGG: ser:SERP2218 3.6e-79 ADP-ribosylglycohydrolase, putative K05521; COG: COG1397 ADP-ribosylglycohydrolase.
 
     0.639
AdaA_2
Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.5e-12 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.617
AraC_1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 6.9e-14 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.
 
  
 0.602
degA
Sugar-binding domain protein; KEGG: efa:EF1922 6.1e-07 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
  
   
 0.581
EDS07875.1
Hypothetical protein; KEGG: cpe:CPE0858 0.00043 bdhA; NADH-dependent butanol dehydrogenase K00100.
       0.578
EDS07876.1
Hypothetical protein; KEGG: cpe:CPE0858 7.4e-33 bdhA; NADH-dependent butanol dehydrogenase K00100; COG: COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; Psort location: Cytoplasmic, score: 9.65.
       0.578
adh2_1
Hypothetical protein; KEGG: cpe:CPE0858 3.1e-14 bdhA; NADH-dependent butanol dehydrogenase K00100; COG: COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; Psort location: Cytoplasmic, score: 8.87.
       0.578
pnuC
COG: COG3201 Nicotinamide mononucleotide transporter; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.576
nagA
KEGG: tte:TTE0232 6.9e-69 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443; COG: COG1820 N-acetylglucosamine-6-phosphate deacetylase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.540
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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