STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07892.1Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87. (162 aa)    
Predicted Functional Partners:
EDS07891.1
DNA binding domain of tn916 integrase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
     0.994
EDS07890.1
Excisionase from transposon Tn916.
 
   
 0.902
EDS06956.1
Hypothetical protein; COG: COG4974 Site-specific recombinase XerD.
  
     0.774
EDS05549.1
Hypothetical protein; COG: COG4974 Site-specific recombinase XerD.
  
     0.774
EDS05540.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
  
     0.772
EDS06977.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group.
  
    0.762
EDS06222.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA2762 1.7e-05 boxR; putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain K00891; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.647
EDS05598.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.617
tetO_1
KEGG: ana:all4338 5.0e-66 fus; translation elongation factor EF-G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
  
    0.595
EDS08759.1
Sigma-70, region 4; KEGG: bcz:BCZK3297 0.00015 RNA polymerase ECF-type sigma factor K03088; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.571
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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