STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cat3Putative chloramphenicol O-acetyltransferase; KEGG: cac:CAC0235 8.5e-16 chloramphenicol acetyltransferase K00638; COG: COG4845 Chloramphenicol O-acetyltransferase. (207 aa)    
Predicted Functional Partners:
EDS07894.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.693
EDS07895.1
Hypothetical protein.
       0.693
metG
methionine--tRNA ligase, beta subunit; KEGG: pgi:PG0170 8.4e-22 metG; methionyl-tRNA synthetase K01874; COG: COG0073 EMAP domain; Psort location: Cytoplasmic, score: 9.98.
       0.476
EDS06783.1
Hypothetical protein; COG: NOG23666 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.465
EDS07897.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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