Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
metGmethionine--tRNA ligase, beta subunit; KEGG: pgi:PG0170 8.4e-22 metG; methionyl-tRNA synthetase K01874; COG: COG0073 EMAP domain; Psort location: Cytoplasmic, score: 9.98. (156 aa)    
Predicted Functional Partners:
pheS
KEGG: cpr:CPR_1852 5.2e-119 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889; COG: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Psort location: Cytoplasmic, score: 10.00.
  
 
 0.907
PurL
Phosphoribosylformylglycinamidine synthase; KEGG: cac:CAC1655 0. purQ, purL; bifunctional enzyme phosphoribosylformylglycinamidine (FGAM) synthase (synthetase domain/glutamine amidotransferase domain) K01952; COG: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.599
EDS07897.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.537
EDS07894.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.526
EDS07895.1
Hypothetical protein.
       0.526
cat3
Putative chloramphenicol O-acetyltransferase; KEGG: cac:CAC0235 8.5e-16 chloramphenicol acetyltransferase K00638; COG: COG4845 Chloramphenicol O-acetyltransferase.
       0.476
rny_2
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.438
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate.
  
  
 0.430
EDS07898.1
Hypothetical protein.
       0.411
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.408
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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