Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07913.1Hypothetical protein; COG: NOG21970 non supervised orthologous group. (94 aa)    
Predicted Functional Partners:
EDS07915.1
Hypothetical protein; COG: NOG11752 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.692
EDS07914.1
Flavodoxin; KEGG: rsp:RSP_3191 2.2e-09 fprA; flavodoxin; COG: COG0716 Flavodoxins.
 
     0.683
EDS07681.1
Hypothetical protein; COG: NOG13233 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.532
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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