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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC_2Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87. (324 aa)    
Predicted Functional Partners:
XerD_2
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
 
     0.945
xerD_3
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Belongs to the 'phage' integrase family.
 
     0.945
EDS08821.1
Hypothetical protein; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
  
     0.764
XerD_4
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.758
xerD_5
Hypothetical protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.754
EDS06360.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.637
bltD
KEGG: baa:BA_3057 3.3e-14 acetyltransferase (GNAT) family K00663; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.552
EDS06742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.475
EDS07929.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.474
EDS07373.1
VRR-NUC domain protein.
  
     0.469
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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