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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07966.1V-type ATPase 116kDa subunit family protein; KEGG: ctc:CTC00994 2.3e-93 V-type sodium ATP synthase subunit I K02123; COG: COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family. (673 aa)    
Predicted Functional Partners:
ntpB_1
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.999
ntpA
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.999
ntpG
ATP synthase, subunit F; KEGG: ctc:CTC00998 4.0e-18 V-type sodium ATP synthase subunit G K02122; COG: COG1436 Archaeal/vacuolar-type H+-ATPase subunit F; Psort location: Cytoplasmic, score: 8.87.
 
 0.999
ntpK
KEGG: cno:NT01CX_1643 8.6e-39 atpK; V-type sodium ATP synthase subunit K K01549; COG: COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the V-ATPase proteolipid subunit family.
 
 0.999
ntpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.998
ntpC
KEGG: ctc:CTC00997 2.3e-29 V-type sodium ATP synthase subunit C K02119; COG: COG1527 Archaeal/vacuolar-type H+-ATPase subunit C; Psort location: Cytoplasmic, score: 8.87.
 
 0.996
atpE_1
ATP synthase, subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.996
atpA
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.977
EDS08044.1
ATP synthase subunit C; KEGG: ctc:CTC02330 2.9e-22 putative V-type sodium ATP synthase subunit K K02124; COG: NOG21876 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.976
ntpB_2
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.973
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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