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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07988.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87. (329 aa)    
Predicted Functional Partners:
mglB_1
Hypothetical protein; KEGG: msm:MSMEG_3095 5.0e-12 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.914
yehU_2
HAMP domain protein; KEGG: bha:BH3447 4.8e-61 two-component sensor histidine kinase K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
   0.912
EDS07991.1
Response regulator receiver domain protein; KEGG: ava:Ava_2028 1.3e-15 two component transcriptional regulator, LuxR family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
     0.874
cckA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ret:RHE_CH02326 3.0e-25 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.853
mglB_2
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 8.1e-16 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.726
MglA_3
ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.7e-161 mglA; galactoside transport ATP-binding protein mglA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.675
mglC
KEGG: aha:AHA_1905 1.3e-37 L-arabinose ABC transporter, permease protein; COG: COG4211 ABC-type glucose/galactose transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.638
rbsD
RbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.563
AraC_4
KEGG: bcz:BCZK3497 3.4e-07 adaA; transcriptional regulator, AraC family K00567; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
  
     0.530
xylR
Transcriptional regulator, AraC family; KEGG: bcz:BCZK2914 8.7e-07 adaA; methylphosphotriester-DNA alkyltransferase K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.462
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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