Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08013.1Hypothetical protein; COG: COG3593 Predicted ATP-dependent endonuclease of the OLD family; Psort location: Cytoplasmic, score: 8.87. (373 aa)    
Predicted Functional Partners:
EDS08012.1
Dinitrogenase iron-molybdenum cofactor; COG: COG1342 Predicted DNA-binding proteins; Psort location: Cytoplasmic, score: 8.87.
       0.542
EDS05129.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.518
EDS04857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.504
EDS04858.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.488
EDS08589.1
Hypothetical protein.
  
     0.478
EDS05862.1
Hypothetical protein.
  
     0.478
EDS08014.1
Hypothetical protein; KEGG: cno:NT01CX_0497 0.0013 pflC; pyruvate formate-lyase K00538.
       0.477
EDS07769.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
  
     0.472
EDS05759.1
Hypothetical protein.
  
     0.469
EDS06915.1
Hypothetical protein; KEGG: ppr:PBPRA2674 0.0079 galU; putative UTP-glucose-1-phosphateuridylyltransferase, galU K00963.
  
     0.459
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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