Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08021.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (206 aa)    
Predicted Functional Partners:
EDS08022.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.685
EDS08743.1
Hypothetical protein; KEGG: efa:EF3127 0.0074 gmk-2; guanylate kinase K00942.
  
     0.506
abgB_2
Amidohydrolase; KEGG: eco:b1337 3.8e-61 abgB; predicted peptidase, aminobenzoyl-glutamate utilization protein K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase M20A family.
       0.485
EDS08020.1
Transcriptional regulator, HxlR family; COG: COG1733 Predicted transcriptional regulators.
       0.439
EDS07256.1
Hypothetical protein; KEGG: lpl:lp_1381 1.0e-26 astA; arylsulfate sulfotransferase K01023; COG: NOG14107 non supervised orthologous group.
  
     0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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