Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SipW_1KEGG: cpr:CPR_0480 6.3e-20 peptidase, putative K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.75. (180 aa)    
Predicted Functional Partners:
SipW_2
Signal peptidase I; KEGG: cpr:CPR_2281 1.3e-21 sipW; signal peptidase I K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.75.
  
  
 
0.917
EDS08026.1
Hypothetical protein; KEGG: mxa:MXAN_2567 0.00016 peptidase, M50A (S2P protease) subfamily; COG: COG5295 Autotransporter adhesin.
       0.785
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
 
     0.732
EDS08031.1
COG: COG3764 Sortase (surface protein transpeptidase); Psort location: CytoplasmicMembrane, score: 9.87.
 
   
 0.678
EDS08032.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
   
 0.673
EDS08029.1
Hypothetical protein.
  
    0.645
EDS08027.1
Hypothetical protein.
     
 0.630
EDS08028.1
Hypothetical protein.
       0.607
EDS08030.1
Hypothetical protein; KEGG: oih:OB2434 0.0060 eno; enolase K01689.
     
 0.584
minE
Putative cell division topological specificity factor MinE; Psort location: Cytoplasmic, score: 8.87.
   
    0.550
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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