Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08033.1LPXTG-motif cell wall anchor domain protein; KEGG: ecj:JW2924 0.0013 ansB; periplasmic L-asparaginase II K01424; COG: NOG22227 non supervised orthologous group; Psort location: Cellwall, score: 9.98. (480 aa)    
Predicted Functional Partners:
EDS08031.1
COG: COG3764 Sortase (surface protein transpeptidase); Psort location: CytoplasmicMembrane, score: 9.87.
 
   
 0.907
EDS08032.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
   
 0.907
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
 
     0.892
EDS08035.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.673
EDS05048.1
Hypothetical protein; COG: NOG08696 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.641
EDS07825.1
Amidohydrolase family protein; COG: NOG27356 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.619
EDS06033.1
Hypothetical protein; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
    0.612
EDS08030.1
Hypothetical protein; KEGG: oih:OB2434 0.0060 eno; enolase K01689.
     
 0.585
EDS05413.1
Hypothetical protein; KEGG: cal:orf19.335 0.0016 poorly conserved hypothetical protein K01768; COG: COG3291 FOG: PKD repeat.
  
     0.583
EDS08029.1
Hypothetical protein.
       0.558
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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