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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08034.1KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99. (1865 aa)    
Predicted Functional Partners:
EDS08033.1
LPXTG-motif cell wall anchor domain protein; KEGG: ecj:JW2924 0.0013 ansB; periplasmic L-asparaginase II K01424; COG: NOG22227 non supervised orthologous group; Psort location: Cellwall, score: 9.98.
 
     0.893
EDS08035.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.890
EDS08031.1
COG: COG3764 Sortase (surface protein transpeptidase); Psort location: CytoplasmicMembrane, score: 9.87.
 
   
 0.866
EDS08032.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
   
 0.856
pyk-2
Pyruvate kinase; KEGG: tte:TTE1815 8.7e-133 pykF; pyruvate kinase K00873; COG: COG0469 Pyruvate kinase; Psort location: Cytoplasmic, score: 8.87.
  
    0.774
EDS08803.1
Hypothetical protein; KEGG: bme:BMEI1837 0.00077 cellobiose-phosphorylase K00702; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cytoplasmic, score: 8.87.
  
     0.743
SipW_1
KEGG: cpr:CPR_0480 6.3e-20 peptidase, putative K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.75.
 
   
 0.735
EDS08038.1
Hypothetical protein; KEGG: reh:H16_B1607 0.0014 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.598
EDS08030.1
Hypothetical protein; KEGG: oih:OB2434 0.0060 eno; enolase K01689.
     
 0.550
EDS08312.1
Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.548
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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