Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08035.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (141 aa)    
Predicted Functional Partners:
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
 
     0.890
EDS08038.1
Hypothetical protein; KEGG: reh:H16_B1607 0.0014 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.781
EDS06263.1
Hypothetical protein.
 
     0.697
EDS06264.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.693
EDS06266.1
Hypothetical protein; COG: COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
     0.689
EDS08033.1
LPXTG-motif cell wall anchor domain protein; KEGG: ecj:JW2924 0.0013 ansB; periplasmic L-asparaginase II K01424; COG: NOG22227 non supervised orthologous group; Psort location: Cellwall, score: 9.98.
 
     0.673
EDS06262.1
Hypothetical protein.
 
     0.589
EDS06261.1
Hypothetical protein.
 
     0.587
EDS08036.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.551
IscR_1
Transcriptional regulator, Rrf2 family; COG: COG1959 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
     0.547
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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