Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atpFKEGG: mth:MTH956 6.4e-11 ATP synthase, subunit F K02122; COG: COG1436 Archaeal/vacuolar-type H+-ATPase subunit F; Psort location: Cytoplasmic, score: 8.87. (102 aa)    
Predicted Functional Partners:
EDS08044.1
ATP synthase subunit C; KEGG: ctc:CTC02330 2.9e-22 putative V-type sodium ATP synthase subunit K K02124; COG: NOG21876 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.994
atpA
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.993
atpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.992
ntpB_2
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.992
atpC
KEGG: ctc:CTC02332 2.7e-42 V-type sodium ATP synthase subunit C K02119; COG: COG1527 Archaeal/vacuolar-type H+-ATPase subunit C; Psort location: Cytoplasmic, score: 8.87.
 
 0.992
EDS08045.1
V-type ATPase 116kDa subunit family protein; KEGG: ctc:CTC02331 1.7e-74 V-type sodium ATP synthase subunit I K02123; COG: COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.990
AtpE_2
Hypothetical protein; KEGG: afu:AF1163 1.3e-07 atpE; H+-transporting ATP synthase, subunit E K02121; COG: COG1390 Archaeal/vacuolar-type H+-ATPase subunit E; Psort location: Cytoplasmic, score: 8.87.
 
 0.989
ntpB_1
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.957
ntpA
ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.954
ntpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.920
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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