STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_6KEGG: bcz:BCZK3497 4.6e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98. (286 aa)    
Predicted Functional Partners:
SoxS_2
Transcriptional regulator, AraC family; KEGG: bha:BH0394 3.6e-13 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.832
AdaA_2
Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.5e-12 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.816
UidB
Transporter, major facilitator family protein; KEGG: eci:UTI89_C4210 6.4e-34 yicJ; hypothetical symporter YicJ K03292; COG: COG2211 Na+/melibiose symporter and related transporters; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.762
YicJ_1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C4210 7.2e-35 yicJ; hypothetical symporter YicJ K03292; COG: COG2211 Na+/melibiose symporter and related transporters; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.667
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.655
sigF
Putative RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.655
rpoD-2
Hypothetical protein; KEGG: reh:H16_A1626 3.9e-06 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; COG: COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Psort location: Cytoplasmic, score: 9.98.
    
 
 0.655
EDS06111.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
 
 0.655
btr_1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 3.8e-14 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
0.642
araC_2
KEGG: bcz:BCZK3497 2.2e-10 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
0.592
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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