Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UidBTransporter, major facilitator family protein; KEGG: eci:UTI89_C4210 6.4e-34 yicJ; hypothetical symporter YicJ K03292; COG: COG2211 Na+/melibiose symporter and related transporters; Psort location: CytoplasmicMembrane, score: 10.00. (504 aa)    
Predicted Functional Partners:
araC_6
KEGG: bcz:BCZK3497 4.6e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
     0.762
lacZ
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: msu:MS0749 2.1e-35 lacZ; beta-galactosidase/beta-glucuronidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.718
EDS07783.1
Hypothetical protein.
       0.568
ebgA
KEGG: cpe:CPE0771 1.3e-152 bgaL; beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.480
KdgK
Hypothetical protein; KEGG: hso:HS_1329 3.2e-23 kdgK; 2-keto-3-deoxygluconate kinase K00874; COG: COG0524 Sugar kinases, ribokinase family.
 
   
 0.448
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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