Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
slyA_2Transcriptional regulator, MarR family; COG: NOG16844 non supervised orthologous group. (143 aa)    
Predicted Functional Partners:
folT
Hypothetical protein; COG: NOG18662 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.538
EDS08576.1
Hypothetical protein; KEGG: cpf:CPF_1123 1.3e-16 cell wall-associated serine proteinase K01361; COG: NOG17334 non supervised orthologous group.
  
  
 0.523
EDS07212.1
Hypothetical protein; COG: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
  
 0.515
EDS07681.1
Hypothetical protein; COG: NOG13233 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDS07682.1
Hypothetical protein; COG: NOG21970 non supervised orthologous group.
       0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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