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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07710.1Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (281 aa)    
Predicted Functional Partners:
yxlF_9
KEGG: fal:FRAAL1877 1.4e-36 putative ABC transporter ATP-binding protein; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.902
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.751
EDS04944.1
Hypothetical protein; KEGG: rle:RL2226 0.0022 cdsA; putative phosphatidate cytidylyltransferase K00981; COG: NOG07239 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.718
hemE_3
Hypothetical protein; KEGG: mmp:MMP0831 4.3e-16 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.717
EDS08576.1
Hypothetical protein; KEGG: cpf:CPF_1123 1.3e-16 cell wall-associated serine proteinase K01361; COG: NOG17334 non supervised orthologous group.
  
     0.673
EDS05838.1
Amidohydrolase family protein; COG: COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold; Psort location: Cytoplasmic, score: 8.87.
  
     0.660
EDS05358.1
Hypothetical protein.
  
     0.649
EDS08556.1
COG: COG3428 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.647
EDS08607.1
Cohesin domain protein; KEGG: bce:BC5339 8.8e-07 DNA-directed RNA polymerase delta chain K03048; COG: COG5129 Nuclear protein with HMG-like acidic region.
  
     0.646
EDS04859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.613
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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