Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07720.1Hypothetical protein; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (380 aa)    
Predicted Functional Partners:
drrA_3
KEGG: rha:RHA1_ro04791 5.8e-43 ABC transporter, ATP-binding component K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.960
EDS07719.1
Hypothetical protein; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.959
DesK
Histidine kinase; KEGG: bld:BLi04303 1.2e-17 yvfT; similar to two-component sensor histidine kinase [YvfU]; RBL03602 K02480; COG: COG4585 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.910
degU
Response regulator receiver domain protein; KEGG: ava:Ava_2028 8.9e-37 two component transcriptional regulator, LuxR family; Psort location: Cytoplasmic, score: 9.65.
 
   
 0.841
GlgX_2
Putative glycogen debranching enzyme GlgX; KEGG: syn:slr1857 1.8e-189 glgX; glycogen operon protein GlgX K02438; COG: COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Psort location: Cytoplasmic, score: 9.98; Belongs to the glycosyl hydrolase 13 family.
  
    0.529
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
  
     0.520
EDS08563.1
Hypothetical protein; COG: COG5660 Predicted integral membrane protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.486
yxlF_6
KEGG: rha:RHA1_ro06063 5.0e-50 probable ABC transporter, ATP-binding component K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.447
EDS05993.1
Alcohol acetyltransferase; COG: NOG32388 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.441
EDS05114.1
4Fe-4S binding domain protein; KEGG: afu:AF0131 1.3e-08 NAD(P)H-flavin oxidoreductase, putative; COG: COG0778 Nitroreductase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.429
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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