Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
degUResponse regulator receiver domain protein; KEGG: ava:Ava_2028 8.9e-37 two component transcriptional regulator, LuxR family; Psort location: Cytoplasmic, score: 9.65. (207 aa)    
Predicted Functional Partners:
DesK
Histidine kinase; KEGG: bld:BLi04303 1.2e-17 yvfT; similar to two-component sensor histidine kinase [YvfU]; RBL03602 K02480; COG: COG4585 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.987
EDS07719.1
Hypothetical protein; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.862
drrA_3
KEGG: rha:RHA1_ro04791 5.8e-43 ABC transporter, ATP-binding component K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.858
EDS07720.1
Hypothetical protein; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.841
GlgX_2
Putative glycogen debranching enzyme GlgX; KEGG: syn:slr1857 1.8e-189 glgX; glycogen operon protein GlgX K02438; COG: COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Psort location: Cytoplasmic, score: 9.98; Belongs to the glycosyl hydrolase 13 family.
       0.757
cckA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ret:RHE_CH02326 3.0e-25 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.686
EDS07726.1
KEGG: mbu:Mbur_1274 4.0e-25 alanine dehydrogenase K01750; COG: COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog; Psort location: Cytoplasmic, score: 8.87.
       0.540
YeeO_2
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.530
yabJ
Putative endoribonuclease L-PSP; KEGG: ape:APE_1501.1 1.2e-18 ribonuclease UK114; COG: COG0251 Putative translation initiation inhibitor, yjgF family; Psort location: Cytoplasmic, score: 8.87.
       0.500
arcB
KEGG: ehi:149.t00020 2.1e-19 ornithine cyclodeaminase, putative K01750; COG: COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog; Psort location: Cytoplasmic, score: 8.87.
       0.499
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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