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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07732.1Hypothetical protein; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87. (210 aa)    
Predicted Functional Partners:
EDS07731.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.576
EDS07735.1
DEAD2 domain protein; KEGG: mja:MJ0942 7.3e-20 dinG; ATP-dependent DNA helicase DinG, putative K01529; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score: 8.87.
 
     0.547
EDS07733.1
Putative DNA modification/repair radical SAM protein; COG: COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif; Psort location: Cytoplasmic, score: 8.87.
       0.542
EDS07734.1
Putative DNA metabolism protein; KEGG: ccr:CC2333 1.7e-05 phage SPO1 DNA polymerase-related protein K02334; COG: COG1573 Uracil-DNA glycosylase; Psort location: Cytoplasmic, score: 8.87.
       0.542
EDS06176.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
     0.470
glgB
KEGG: bcz:BCZK4621 1.2e-121 glgB; glycogen branching enzyme K00700; COG: COG0296 1,4-alpha-glucan branching enzyme; Psort location: Cytoplasmic, score: 8.87.
  
    0.455
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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