Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDS07733.1Putative DNA modification/repair radical SAM protein; COG: COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif; Psort location: Cytoplasmic, score: 8.87. (444 aa)    
Predicted Functional Partners:
EDS07734.1
Putative DNA metabolism protein; KEGG: ccr:CC2333 1.7e-05 phage SPO1 DNA polymerase-related protein K02334; COG: COG1573 Uracil-DNA glycosylase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.961
EDS07735.1
DEAD2 domain protein; KEGG: mja:MJ0942 7.3e-20 dinG; ATP-dependent DNA helicase DinG, putative K01529; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score: 8.87.
       0.594
EDS07732.1
Hypothetical protein; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.542
EDS05536.1
Hypothetical protein; KEGG: ecj:JW0278 2.3e-102 yagR; predicted oxidoreductase with molybdenum-binding domain K00087; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
     0.520
EDS07731.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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