Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07763.1Hypothetical protein; COG: NOG27907 non supervised orthologous group. (192 aa)    
Predicted Functional Partners:
EDS08609.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.7e-54 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.654
EDS06753.1
Nucleotidyltransferase domain protein; COG: COG1708 Predicted nucleotidyltransferases.
  
     0.601
EDS06822.1
GBS Bsp-like repeat protein; COG: NOG18564 non supervised orthologous group.
  
 
   0.574
immR_6
DNA-binding helix-turn-helix protein; KEGG: eba:ebA5278 7.2e-05 bzdR; regulator of the anaerobic catobolism of benzoate BzdR K00891; COG: NOG36343 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.541
EDS05644.1
Hypothetical protein.
  
     0.512
EDS08613.1
Hypothetical protein; COG: NOG39007 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.459
AdaA_2
Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.5e-12 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.455
EDS05648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.443
EDS06993.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.431
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.422
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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