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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07769.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87. (75 aa)    
Predicted Functional Partners:
EDS07655.1
Hypothetical protein; KEGG: tte:TTE2564 2.6e-11 surA2; parvulin-like peptidyl-prolyl isomerase K07533; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.737
EDS08109.1
Putative stage III sporulation protein AF; COG: NOG13844 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.702
EDS07631.1
Hypothetical protein.
  
     0.699
EDS08472.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.688
EDS08296.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.682
EDS07956.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.676
EDS08473.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.671
EDS07977.1
Hypothetical protein; KEGG: rno:309804 1.6e-08 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: KOG3544 Collagens (type IV and type XIII), and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.671
EDS04898.1
KEGG: cyb:CYB_1515 0.00089 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
  
     0.652
EDS07540.1
Sodium pump decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.651
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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