STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XerC_5Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87. (320 aa)    
Predicted Functional Partners:
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tma:TM1359 1.6e-21 sensor histidine kinase K02486; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.624
EDS07453.1
Hypothetical protein.
       0.620
EDS04974.1
KEGG: pen:PSEEN3665 0.00049 efflux ABC transporter, ATP-binding/permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.596
EDS07006.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 5.7e-08 beta-N-acetylhexosaminidase K01207; COG: NOG36584 non supervised orthologous group.
  
     0.592
bioB_1
Radical SAM domain protein; KEGG: aae:aq_975 5.8e-09 bioB; biotin synthetase K01012; COG: COG0502 Biotin synthase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
  
     0.586
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
 0.549
EDS07008.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 2.3e-10 beta-N-acetylhexosaminidase K01207; COG: NOG23360 non supervised orthologous group.
  
     0.530
EDS06985.1
Hypothetical protein; KEGG: bfs:BF1664 4.3e-06 putative mannose-6-phosphate isomerase K01809; COG: NOG26319 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.525
FchA
Formiminotransferase-cyclodeaminase; KEGG: chy:CHY_1879 1.3e-42 fchA2; methenyltetrahydrofolate cyclohydrolase K01491; COG: COG3404 Methenyl tetrahydrofolate cyclohydrolase.
     
 0.520
lpdA
Dihydrolipoyl dehydrogenase; KEGG: chy:CHY_0713 8.1e-98 lpdA; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase K00382; COG: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Psort location: Cytoplasmic, score: 9.98.
       0.518
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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